PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00048.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 276aa    MW: 30154.3 Da    PI: 6.3665
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00048.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19141190255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              gy+GVr+++ +g+++AeIrdp+    r +r++lg+f tae+Aa+a+++a+  ++g
  Rsa1.0_00048.1_g00016.1 141 GYRGVRQRP-WGKFAAEIRDPK----RaTRVWLGTFETAEDAARAYDRAAIGFRG 190
                              8********.**********83....57*********************987776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-12141189IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21141199IPR016177DNA-binding domain
SMARTSM003803.9E-37141204IPR001471AP2/ERF domain
PROSITE profilePS5103224.012141198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-32142198IPR001471AP2/ERF domain
CDDcd000182.57E-21142198No hitNo description
PRINTSPR003671.5E-11142153IPR001471AP2/ERF domain
PRINTSPR003671.5E-11164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MHYPHNRPEF VGAPPSDRDL TRYHHREQLS PEQELSVMVS ALQHVISGEN ETAPYQGFSS  60
TDSTVISAGM PRSDSDTCQV CRIDGCLGCN YFFAPNQRIE NRVEEEGISS SSRGRESPVA  120
TGKKAAEGGG KVRKRKNKKN GYRGVRQRPW GKFAAEIRDP KRATRVWLGT FETAEDAARA  180
YDRAAIGFRG PRAKLNFPFM DYTSSPVAAD NVGTSASVNA SASASTSVSA GDSAETEQWR  240
GGGDCDMDEY LKMMMMMDFG SGDSSDSGNT IADMFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-25138199264ATERF1
2gcc_A7e-25138199264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412231.11e-138hypothetical protein EUTSA_v10027524mg
SwissprotQ9SZ061e-116EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLV4MBC11e-138V4MBC1_EUTSA; Uncharacterized protein
STRINGBra011529.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-86redox responsive transcription factor 1